PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_6FF2ED257.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 147aa    MW: 16594 Da    PI: 6.0029
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_6FF2ED257.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.23.1e-13611381289
                            HTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
                     B3  12 ksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                            ++ rl lp +  ++              ++l+d+  r W v +    +s  + +t+GWk+Fv an+L++gD +v+ +d + +e
  Traes_6AL_6FF2ED257.1  61 TQTRLELPDPLSNAVgrkgR---LDRNIVMLKDPMKRLWPVFY--HETSLFVGFTGGWKSFVAANKLEAGDLCVLLMDLDeDE 138
                            45568888888766654322...233479999***********..******************************97755233 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.20950147IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-1455137IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-1455136IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.4E-555144IPR003340B3 DNA binding domain
PfamPF023628.1E-1161137IPR003340B3 DNA binding domain
CDDcd100173.99E-1264147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MSANRAVAHQ TEHHFFRQED AKSSNPAPPV PLLPVKVEVS ELDDHRPVLK ASLQFVVPST  60
TQTRLELPDP LSNAVGRKGR LDRNIVMLKD PMKRLWPVFY HETSLFVGFT GGWKSFVAAN  120
KLEAGDLCVL LMDLDEDELV YDVEITR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003575292.22e-58PREDICTED: B3 domain-containing protein Os02g0598200-like isoform X1
RefseqXP_014755477.12e-58PREDICTED: B3 domain-containing protein Os02g0598200-like isoform X1
SwissprotQ6K5K29e-48Y2982_ORYSJ; B3 domain-containing protein Os02g0598200
TrEMBLW5G7T51e-106W5G7T5_WHEAT; Uncharacterized protein
STRINGBRADI3G47847.17e-58(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122722730
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]